PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g023650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 551aa    MW: 61107.9 Da    PI: 6.5625
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g023650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.3e-15179238155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sopen11g023650.1 179 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 238
                       57*******************666664477446*************************98 PP

2AP247.54.6e-15283332355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sopen11g023650.1 283 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 332
                       9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-23179248No hitNo description
SuperFamilySSF541712.68E-17179248IPR016177DNA-binding domain
PfamPF008477.2E-12179238IPR001471AP2/ERF domain
SMARTSM003805.8E-30180252IPR001471AP2/ERF domain
PROSITE profilePS5103219.256180246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-16180247IPR001471AP2/ERF domain
PRINTSPR003673.7E-6181192IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18281341IPR016177DNA-binding domain
CDDcd000184.59E-24281340No hitNo description
SMARTSM003801.1E-31282346IPR001471AP2/ERF domain
PROSITE profilePS5103219.296282340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18282340IPR001471AP2/ERF domain
PfamPF008472.8E-9283332IPR001471AP2/ERF domain
PRINTSPR003673.7E-6322342IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MNSNNWLSFP LSPTHSSLPP HLQNAQSHHF SLGLVNETID NPFQNQEWNL MNTPGSNEVP  60
KVADFLGMNK SENQSELIPY NEIQANDSDY LFQNNHLMPS MQNALAPPPT NNYDLQENAC  120
NIQSLTLSMG SGKGSTSETS ASPSANAATA SATAENSNNT SIVEAAPRRT LDTFGQRTSI  180
YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGTS  240
TTTNFPISNY EKELEDMKHM TRQEFVAAIR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG  300
RVAGNKDLYL GTFTTEEEAA EAYDIAAIKF RGLNAVTNFD MNRYDVKAIL ESNTLPIGGG  360
AAKRLKEAQA LESSRKRDQE MMALNSSFQY GNSNPLQAYP LMQQHQPSFD NSQPLLTLQN  420
HDISQYNIQD PSSQFHQSYL QTQLQLQNNS HQVSLYNNYL QNNQVFLHGL MNNNEGSSSG  480
SYSTGGYFGN SPGLGGMSSN STSGNNGGGG GAHEEVALVK VDYDNMPSYN GWSGESSVQG  540
SNPGVFSMWN E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058923.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ5YGP70.0PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLK4D8Y70.0K4D8Y7_SOLLC; Uncharacterized protein
STRINGSolyc11g061750.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein